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Published: Jun 12, 2025 by Frankie · This post may contain affiliate links · Leave a Comment

Protein Bagel Recipe

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So picture this: it’s a chilly Saturday morning in South Philly, fog hangin’ low over the rowhomes, and I’m standin’ in my kitchen with a hot cup of coffee in one hand and flour on the other. That’s when it hit me — I was craving a bagel. Not just any bagel though. I wanted one that didn’t knock me out with carbs before noon but still gave me that chewy, toasty, hearty bite I grew up on. That’s how this protein bagel recipe was born.

If you're into easy breakfast ideas like this, you might also like my Cinnamon Roll Honeybun Cheesecake, the classic twist on quick treats like the Diet Coke and Cake Mix Recipe, or my other favorite bagel spin — the Cottage Cheese Bagel Recipe.

Now, let me tell ya, I didn’t always mess around with things like Greek yogurt and baking powder instead of yeast. Back in the day, Nonna would raise an eyebrow if I told her I was skippin’ the yeast. "You makin’ a science project or breakfast?" she’d say. But honestly, once I started playin’ with these 3 ingredient protein bagels, I got hooked. It’s just flour, baking powder, and good ol’ full-fat Greek yogurt. Boom — no proofing, no stress.

These bagels check all the boxes: low calorie, high protein bagel recipe, no weird powders, no kitchen gymnastics. Just mix, roll, bake, and boom — breakfast is handled for the week. And if you top 'em with smashed avocado, scallion cream cheese, or some egg whites, you're sittin’ on one heck of a protein-packed start to the day.

Mixing protein bagel dough in a cozy South Philly kitchen
Morning prep for homemade protein bagels in Frankie's kitchen

These babies come out crisp on the outside, soft and chewy inside — everything you want in a bagel. And guess what? You don’t even need an oven if you’ve got an air fryer handy. Just preheat that sucker, pop these in, and you’ve got golden brown perfection in 20 minutes.

Baked protein bagels cooling on wire rack
Golden homemade protein bagels cooling in Frankie's kitchen

Wanna make it even better? Try the protein bagel recipe with cottage cheese variation — just swap the yogurt with blended cottage cheese. Or go classic with protein bagel recipe Greek yogurt if you're like me and keep tubs of Fage 5% in the fridge at all times.

Now lemme hit you with some of my go-to high protein bagel toppings:
‱ Scrambled egg whites and scallion cream cheese
‱ Peanut butter and banana
‱ Avocado, chili flakes, and a soft-boiled egg
‱ Smoked salmon, capers, and whipped Greek yogurt with lemon

Four variations of high protein bagel toppings
Protein bagels topped with delicious, high-protein combos

Best part? These are make-ahead champs. Store ‘em in the fridge, toast when needed, and boom — breakfast or post-workout fuel without any hassle.

Storing protein bagels for later
Easy freezer storage for your weekly protein bagel prep

Here are some questions folks often ask me


Are protein bagels healthy?
Yeah, I’d say they’re a pretty solid pick. You’re lookin’ at about 10g of protein per bagel, not too much fat (depends on the yogurt), and a whole lot less mystery than store-bought stuff.

How do they make high-protein bagels?
Simple — they swap out the yeast and long proofing for baking powder and load in the Greek yogurt. No fancy powders, just pantry basics.

What are the two ingredients in protein bagels?
If you're keepin’ it super simple: Greek yogurt and self-rising flour. But the version I use adds salt, baking powder, and egg white for that perfect finish.

What makes bagels so high in protein?
It’s mostly the Greek yogurt, honestly. That stuff is like the secret weapon in the fridge — full of flavor, thick, creamy, and packed with protein.

Protein Bagel Recipe

Freshly baked protein bagel sliced with cream cheese
Warm, fluffy protein bagel ready to enjoy with cream cheese
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Protein Bagel Recipe

Freshly baked protein bagel sliced with cream cheese
Print Recipe

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Learn how to make these chewy, golden protein bagels at home with just a handful of simple ingredients like Greek yogurt, flour, and baking powder. They’re high in protein, easy to freeze, and endlessly customizable!

  • Author: Frankie
  • Prep Time: 15 minutes
  • Cook Time: 25 minutes and (5–10 minutes resting)
  • Total Time: 45–50 minutes
  • Yield: 6 bagels 1x
  • Category: Breakfast
  • Method: Baked (or air fried)
  • Cuisine: American

Ingredients

Scale

2Œ cups all-purpose flour (or bread flour)

4 tsp baking powder

1 tsp kosher salt

1œ cups full-fat Greek yogurt

1 egg white, lightly beaten

Sesame seeds or everything bagel seasoning

Instructions

  1. Preheat oven to 350ÂșF. Line a baking sheet with parchment paper.
  2. In a large bowl, whisk together flour, baking powder, and salt.
  3. Add Greek yogurt and mix with a spatula (or hands) until a dough forms.
  4. Turn dough onto a clean surface. Divide into 6 equal pieces.
  5. Roll each piece into a thick rope (7–8 inches long). Join ends to form a ring.
  6. Place on parchment-lined baking sheet. Let rest for 5–10 minutes.
  7. Brush with egg white and sprinkle your seasoning of choice.
  8. Bake 20–25 minutes or until golden. Cool 10 minutes before slicing.

Notes

  • Use self-rising flour? Swap the flour, baking powder, and most of the salt with 2ÂŒ cups self-rising flour plus ÂŒ teaspoon salt.
  • Air fryer option: Preheat to 300ÂșF for 5 minutes. Cook bagels 15–20 minutes till golden.
  • Toppings: Avocado, scallion cream cheese, egg whites, PB + banana, even smoked salmon.
  • Freezer-friendly: Slice, bag, and freeze for up to 3 months.

Nutrition

  • Serving Size: Per Bagel
  • Calories: 206 Kcal
  • Fat: 2g
  • Carbohydrates: 35g
  • Fiber: 2g
  • Protein: 10g

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My love affair with cooking? Oh boy, that started way back. I grew up in a loud, loving Italian-American house in South Philly where the kitchen was always the busiest room. Read More


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